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Youping Deng

TitleAssociate Professor
InstitutionRush University, Rush Medical College
DepartmentInternal Medicine
Address
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    Collapse Overview 
    Collapse overview
    My Scopus number is 7401531284.
    My NIH COMMONS name is YDENG1.


    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Ross RD, Deng Y, Fang R, Frisch NB, Jacobs JJ, Sumner DR. Discovery of biomarkers to identify peri-implant osteolysis before radiographic diagnosis. J Orthop Res. 2018 Jun 05. PMID: 29873110.
      View in: PubMed
    2. Yu-Rice Y, Edassery SL, Urban N, Hellstrom I, Hellstrom KE, Deng Y, Li Y, Luborsky JL. Selenium-Binding Protein 1 (SBP1) autoantibodies in ovarian disorders and ovarian cancer. Reproduction. 2017 03; 153(3):277-284. PMID: 27965399.
      View in: PubMed
    3. Zhang Y, Chee A, Shi P, Adams SL, Markova DZ, Anderson DG, Smith HE, Deng Y, Plastaras CT, An HS. Intervertebral Disc Cells Produce Interleukins Found in Patients with Back Pain. Am J Phys Med Rehabil. 2016 06; 95(6):407-15. PMID: 26495812.
      View in: PubMed
    4. Costello BT, Silverman ER, Doukky R, Braun LT, Aggarwal NT, Deng Y, Li Y, Lundberg G, Williams KA, Volgman AS. Lipoprotein(a) and Increased Cardiovascular Risk in Women. Clin Cardiol. 2016 Feb; 39(2):96-102. PMID: 26880352.
      View in: PubMed
    5. O'Keefe JA, Robertson-Dick E, Dunn EJ, Li Y, Deng Y, Fiutko AN, Berry-Kravis E, Hall DA. Characterization and Early Detection of Balance Deficits in Fragile X Premutation Carriers With and Without Fragile X-Associated Tremor/Ataxia Syndrome (FXTAS). Cerebellum. 2015 Dec; 14(6):650-62. PMID: 25763861.
      View in: PubMed
    6. Li Y, Melnikov AA, Levenson V, Guerra E, Simeone P, Alberti S, Deng Y. A seven-gene CpG-island methylation panel predicts breast cancer progression. BMC Cancer. 2015 May 19; 15:417. PMID: 25986046; PMCID: PMC4438505.
      View in: PubMed, PubMed Central
    7. McAninch EA, Fonseca TL, Poggioli R, Panos AL, Salerno TA, Deng Y, Li Y, Bianco AC, Iacobellis G. Epicardial adipose tissue has a unique transcriptome modified in severe coronary artery disease. Obesity (Silver Spring). 2015 Jun; 23(6):1267-78. PMID: 25959145; PMCID: PMC5003780.
      View in: PubMed, PubMed Central
    8. Deng Y, Wang H, Hamamoto R, Schaffer D, Duan S. Functional genomics, genetics, and bioinformatics. Biomed Res Int. 2015; 2015:184824. PMID: 25977917; PMCID: PMC4421104.
      View in: PubMed, PubMed Central
    9. Li Y, Rouhi O, Chen H, Ramirez R, Borgia JA, Deng Y. RNA-Seq and Network Analysis Revealed Interacting Pathways in TGF-ß-Treated Lung Cancer Cell Lines. Cancer Inform. 2014; 13(Suppl 5):129-40. PMID: 25991908; PMCID: PMC4384765.
      View in: PubMed, PubMed Central
    10. Yao GH, Deng Y, Liu Y, Xu MJ, Zhang C, Deng YB, Ren WD, Li ZA, Tang H, Zhang QB, Mu YM, Fang LG, Zhang M, Yin LX, Zhang Y. Echocardiographic measurements in normal chinese adults focusing on cardiac chambers and great arteries: a prospective, nationwide, and multicenter study. J Am Soc Echocardiogr. 2015 May; 28(5):570-9. PMID: 25753502.
      View in: PubMed
    11. McAninch EA, Jo S, Preite NZ, Farkas E, Mohácsik P, Fekete C, Egri P, Gereben B, Li Y, Deng Y, Patti ME, Zevenbergen C, Peeters RP, Mash DC, Bianco AC. Prevalent polymorphism in thyroid hormone-activating enzyme leaves a genetic fingerprint that underlies associated clinical syndromes. J Clin Endocrinol Metab. 2015 Mar; 100(3):920-33. PMID: 25569702; PMCID: PMC4333048.
      View in: PubMed, PubMed Central
    12. Guan D, Shao J, Deng Y, Wang P, Zhao Z, Liang Y, Wang J, Yan B. CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data. Bioinformatics. 2014 04 15; 30(8):1190-1192. PMID: 24389658.
      View in: PubMed
    13. Melson J, Li Y, Cassinotti E, Melnikov A, Boni L, Ai J, Greenspan M, Mobarhan S, Levenson V, Deng Y. Commonality and differences of methylation signatures in the plasma of patients with pancreatic cancer and colorectal cancer. Int J Cancer. 2014 Jun 01; 134(11):2656-62. PMID: 24288256.
      View in: PubMed
    14. Davis M, Conlon K, Bohac GC, Barcenas J, Leslie W, Watkins L, Lamzabi I, Deng Y, Li Y, Plate JM. Effect of pemetrexed on innate immune killer cells and adaptive immune T cells in subjects with adenocarcinoma of the pancreas. J Immunother. 2012 Oct; 35(8):629-40. PMID: 22996369.
      View in: PubMed
    15. Deng Y, Meyer SA, Guan X, Escalon BL, Ai J, Wilbanks MS, Welti R, Garcia-Reyero N, Perkins EJ. Analysis of common and specific mechanisms of liver function affected by nitrotoluene compounds. PLoS One. 2011 Feb 08; 6(2):e14662. PMID: 21346803; PMCID: PMC3035612.
      View in: PubMed, PubMed Central
    16. Yang JY, Niemierko A, Bajcsy R, Xu D, Athey BD, Zhang A, Ersoy OK, Li GZ, Borodovsky M, Zhang JC, Arabnia HR, Deng Y, Dunker AK, Liu Y, Ghafoor A. 2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research. BMC Genomics. 2010 Dec 01; 11 Suppl 3:I1. PMID: 21143775; PMCID: PMC2999338.
      View in: PubMed, PubMed Central
    17. Deng Y, Johnson DR, Guan X, Ang CY, Ai J, Perkins EJ. In vitro gene regulatory networks predict in vivo function of liver. BMC Syst Biol. 2010 Nov 12; 4:153. PMID: 21073692; PMCID: PMC2998496.
      View in: PubMed, PubMed Central
    18. Yang JY, Yang MQ, Arabnia HR, Deng Y. Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research. BMC Genomics. 2008 Sep 16; 9 Suppl 2:I1. PMID: 18831773; PMCID: PMC3226104.
      View in: PubMed, PubMed Central
    19. Yang JY, Niemierko A, Yang MQ, Deng Y. Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes. BMC Genomics. 2008 Sep 16; 9 Suppl 2:S9. PMID: 18831800; PMCID: PMC2559899.
      View in: PubMed, PubMed Central
    20. Yang JY, Yang MQ, Luo Z, Ma Y, Li J, Deng Y, Huang X. A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions. BMC Genomics. 2008; 9 Suppl 1:S23. PMID: 18366613; PMCID: PMC2386065.
      View in: PubMed, PubMed Central
    21. Yang JY, Li GZ, Meng HH, Yang MQ, Deng Y. Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection. BMC Genomics. 2008; 9 Suppl 1:S3. PMID: 18366616; PMCID: PMC2386068.
      View in: PubMed, PubMed Central
    22. Yang JY, Yang MQ, Dunker AK, Deng Y, Huang X. Investigation of transmembrane proteins using a computational approach. BMC Genomics. 2008; 9 Suppl 1:S7. PMID: 18366620; PMCID: PMC2386072.
      View in: PubMed, PubMed Central
    23. Wang DW, Deng YB. Hypertrophic cardiomyopathy complicated by severe bradycardias: a pedigree report. Clin Cardiol. 2002 Feb; 25(2):76-80. PMID: 11841154.
      View in: PubMed
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